Computation in Living Cells

Gene Assembly in Ciliates
1. Auflage. Softcover version of original hardcover Auflage 2004
ISBN: 978-3-642-07401-1
Verlag: Springer

Buch, Englisch, 202 Seiten, Paperback, Format (B × H): 155 mm x 235 mm, Gewicht: 341 g

Reihe: Natural Computing Series

Natural Computing is concerned with computation that is taking place in Nature. The investigation of computations in living cells is one of the central and fastest growing areas of research in this field. Gene assembly in ciliates (unicellular organisms) is a splendid example of such computations, and it is fascinating from both the biological and the computational viewpoints. As a matter of fact, both biology and the science of computation have benefited from the interdisciplinary research on the computational nature of gene assembly – this work has helped to clarify important biological aspects of gene assembly, yielded novel insights into the nature of computation, and broadened our understanding of what computation is about.

This monograph gives an accessible account of both the biology and the formal analysis of the gene assembly process. It can be used as a textbook for either graduate courses or seminars.

Zielgruppe

Graduate

Autoren/Hrsg.

Ehrenfeucht, Andrzej

Harju, Tero

Rozenberg, Grzegorz

Petre, Ion

Prescott, David M.

Fachgebiete

• Technische Wissenschaften Technik Allgemein Computeranwendungen in der Technik
• Naturwissenschaften Biowissenschaften Biowissenschaften
• Naturwissenschaften Biowissenschaften Molekularbiologie
• Mathematik | Informatik EDV | Informatik Programmierung | Softwareentwicklung Programmierung: Methoden und Allgemeines
• Mathematik | Informatik EDV | Informatik Informatik Künstliche Intelligenz Wissensbasierte Systeme, Expertensysteme
• Technische Wissenschaften Elektronik | Nachrichtentechnik Elektronik Robotik
• Mathematik | Informatik EDV | Informatik Angewandte Informatik Computeranwendungen in Wissenschaft & Technologie
• Mathematik | Informatik EDV | Informatik Informatik Logik, formale Sprachen, Automaten

Inhaltsverzeichnis

1 An Overview of the Cell.- 2 Ciliates.- 3 Molecular Operations for Gene Assembly.- 4 Model Forming.- 5 Mathematical Preliminaries.- 6 MDS Arrangements and MDS Descriptors.- 7 MDS Descriptor Pointer Reduction System.- 8 Legal Strings.- 9 String Pointer Reduction System.- 10 Overlap Graphs.- 11 Graph Pointer Reduction System.- 12 Invariants.- 13 Patterns of Subsets of Rules.- 14 Gene Assembly Through Cyclic Graph Decomposition.- 15 Intermolecular Model.- 16 Discussion.- References.

Über Autor(innen)

Prof. Rozenberg is multiple Springer author/editor of, e.g., the LNCS series Advances in Petri Nets, of ICALP proceedings, of  "DNA Computing – New Computing Paradigms" by George Paun, Grzegorz Rozenberg, Arto Salomaa, of the "Handbook of Formal Languages" edited by Grzegorz Rozenberg, Arto Salomaa (3 volumes). Rozenberg is also founding editor of the EATCS Texts and Monographs Series and the Natural Computing Series.